PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033699-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 265aa    MW: 29239.8 Da    PI: 8.4839
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033699-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.7e-141967148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed +l ++++ +G++  W+  + + g++R++k+c++rw++yl
  PSME_00033699-RA 19 RGAWTAKEDMILSEYIRIHGNDgGWANLPTKAGLKRSGKSCRLRWLNYL 67
                      89*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-181077IPR009057Homeodomain-like
PROSITE profilePS5129419.0181471IPR017930Myb domain
SMARTSM007176.7E-101869IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-1619115IPR009057Homeodomain-like
PfamPF002498.2E-131967IPR001005SANT/Myb domain
CDDcd001671.70E-72167No hitNo description
PROSITE profilePS500904.71668115IPR017877Myb-like domain
SMARTSM007178.372117IPR001005SANT/Myb domain
CDDcd001670.0038577115No hitNo description
Gene3DG3DSA:1.10.10.603.5E-798115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
RRISIMDSSP CCSKEGLNRG AWTAKEDMIL SEYIRIHGND GGWANLPTKA GLKRSGKSCR  60
LRWLNYLPPD IKRGNISADE EELRSLLLGC IAFLAIGRLP ERTDNEIKNY WNTHLSKKLL  120
LMNQSSTTAT NLKRRSKSPF IVQNHVLNTG PVKKTTVVTQ SQMVRSNSFN VYGCSNRDSH  180
EGFKSCNVEE TMNSSKPFSD LTAATDLITN NDSQPIESKE SRNSTASMSS LVESGRSPDS  240
DSCGGDATSL AESLVDLNEL STSRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287618.16e-53PREDICTED: myb-related protein Hv1
SwissprotQ9S9K92e-46MYB3_ARATH; Transcription factor MYB3
TrEMBLA9NSF06e-84A9NSF0_PICSI; Putative uncharacterized protein
STRINGGLYMA13G16890.11e-50(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-47myb domain protein 3